Package: bdc 1.1.5

bdc: Biodiversity Data Cleaning

It brings together several aspects of biodiversity data-cleaning in one place. 'bdc' is organized in thematic modules related to different biodiversity dimensions, including 1) Merge datasets: standardization and integration of different datasets; 2) Pre-filter: flagging and removal of invalid or non-interpretable information, followed by data amendments; 3) Taxonomy: cleaning, parsing, and harmonization of scientific names from several taxonomic groups against taxonomic databases locally stored through the application of exact and partial matching algorithms; 4) Space: flagging of erroneous, suspect, and low-precision geographic coordinates; and 5) Time: flagging and, whenever possible, correction of inconsistent collection date. In addition, it contains features to visualize, document, and report data quality – which is essential for making data quality assessment transparent and reproducible. The reference for the methodology is Bruno et al. (2022) <doi:10.1111/2041-210X.13868>.

Authors:Bruno Ribeiro [aut, cre], Santiago Velazco [aut], Karlo Guidoni-Martins [aut], Geiziane Tessarolo [aut], Lucas Jardim [aut], Steven Bachman [ctb], Rafael Loyola [ctb]

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Peer review:

Bug tracker:https://github.com/brunobrr/bdc/issues

On CRAN:

bdcbiodiversity-dataworkflow

23 exports 23 stars 2.58 score 123 dependencies 60 scripts 459 downloads

Last updated 8 days agofrom:2b8ce0e45c. Checks:OK: 1 ERROR: 6. Indexed: yes.

Exports:%>%bdc_basisOfRecords_notStandardbdc_clean_namesbdc_coordinates_country_inconsistentbdc_coordinates_emptybdc_coordinates_from_localitybdc_coordinates_outOfRangebdc_coordinates_precisionbdc_coordinates_transposedbdc_country_from_coordinatesbdc_country_standardizedbdc_create_figuresbdc_create_reportbdc_eventDate_emptybdc_filter_out_flagsbdc_filter_out_namesbdc_query_names_taxadbbdc_quickmapbdc_scientificName_emptybdc_standardize_datasetsbdc_summary_colbdc_year_from_eventDatebdc_year_outOfRange

Dependencies:askpassbase64encBHbitbit64blobbslibcachemclassclassIntclicliprcodetoolscolorspacecontentidCoordinateCleanercpp11crayoncrosstalkcrulcurldata.tableDBIdbplyrdigestdoParalleldplyrDTduckdbe1071evaluatefansifarverfastmapfontawesomeforeachfsgenericsgeosphereggplot2gluegtableherehighrhmshtmltoolshtmlwidgetshttpcodehttpuvhttrisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeoaiopensslpillarpkgconfigplyrprettyunitsprogresspromisesproxypurrrqsR6RApiSerializerappdirsRColorBrewerRcppRcppParallelreadrrgbifrgnparserrlangrmarkdownrnaturalearthrprojroots2sassscalessfspstringdiststringfishstringistringrsystaxadbterratibbletidyrtidyselecttinytextriebeardtzdbunitsurltoolsutf8vctrsviridisLitevroomwhiskerwithrwkxfunxml2yaml