Package: bdc 1.1.5
![](https://github.com/brunobrr/bdc/raw/HEAD/man/figures/logo.png)
bdc: Biodiversity Data Cleaning
It brings together several aspects of biodiversity data-cleaning in one place. 'bdc' is organized in thematic modules related to different biodiversity dimensions, including 1) Merge datasets: standardization and integration of different datasets; 2) Pre-filter: flagging and removal of invalid or non-interpretable information, followed by data amendments; 3) Taxonomy: cleaning, parsing, and harmonization of scientific names from several taxonomic groups against taxonomic databases locally stored through the application of exact and partial matching algorithms; 4) Space: flagging of erroneous, suspect, and low-precision geographic coordinates; and 5) Time: flagging and, whenever possible, correction of inconsistent collection date. In addition, it contains features to visualize, document, and report data quality – which is essential for making data quality assessment transparent and reproducible. The reference for the methodology is Bruno et al. (2022) <doi:10.1111/2041-210X.13868>.
Authors:
bdc_1.1.5.tar.gz
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bdc_1.1.5.tgz(r-4.5-any)bdc_1.1.5.tgz(r-4.4-any)bdc_1.1.5.tgz(r-4.3-any)
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bdc.pdf |bdc.html✨
bdc/json (API)
NEWS
# Install 'bdc' in R: |
install.packages('bdc', repos = c('https://brunobrr.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/brunobrr/bdc/issues
Pkgdown site:https://brunobrr.github.io
Last updated 2 months agofrom:756a553986. Checks:1 OK, 7 WARNING. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Feb 16 2025 |
R-4.5-win | WARNING | Feb 16 2025 |
R-4.5-mac | WARNING | Feb 16 2025 |
R-4.5-linux | WARNING | Feb 16 2025 |
R-4.4-win | WARNING | Feb 16 2025 |
R-4.4-mac | WARNING | Feb 16 2025 |
R-4.3-win | WARNING | Feb 16 2025 |
R-4.3-mac | WARNING | Feb 16 2025 |
Exports:%>%bdc_basisOfRecords_notStandardbdc_clean_namesbdc_coordinates_country_inconsistentbdc_coordinates_emptybdc_coordinates_from_localitybdc_coordinates_outOfRangebdc_coordinates_precisionbdc_coordinates_transposedbdc_country_from_coordinatesbdc_country_standardizedbdc_create_figuresbdc_create_reportbdc_eventDate_emptybdc_filter_out_flagsbdc_filter_out_namesbdc_query_names_taxadbbdc_quickmapbdc_scientificName_emptybdc_standardize_datasetsbdc_summary_colbdc_year_from_eventDatebdc_year_outOfRange
Dependencies:askpassbase64encBHbitbit64blobbslibcachemclassclassIntclicliprcodetoolscolorspacecontentidCoordinateCleanercpp11crayoncrosstalkcrulcurldata.tableDBIdbplyrdigestdoParalleldplyrDTduckdbe1071evaluatefansifarverfastmapfontawesomeforeachfsgenericsgeosphereggplot2gluegtableherehighrhmshtmltoolshtmlwidgetshttpcodehttpuvhttrisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeoaiopensslpillarpkgconfigplyrprettyunitsprogresspromisesproxypurrrqsR6RApiSerializerappdirsRColorBrewerRcppRcppParallelreadrrgbifrgnparserrlangrmarkdownrnaturalearthrprojroots2sassscalessfspstringdiststringfishstringistringrsystaxadbterratibbletidyrtidyselecttinytextriebeardtzdbunitsurltoolsutf8vctrsviridisLitevroomwhiskerwithrwkxfunxml2yaml